tirank.LoadData.check_bulk

tirank.LoadData.check_bulk(savePath, bulkExp, bulkClinical)

Checks and filters bulk data for common samples.

Intersects the samples in the bulk expression columns and the bulk clinical index. Filters both DataFrames to keep only the common samples and saves the results as pickle files.

Parameters:

• savePath (str) – The main project directory path to save results.

• bulkExp (pd.DataFrame) – Bulk expression DataFrame (genes x samples).

• bulkClinical (pd.DataFrame) – Bulk clinical DataFrame (samples x variables).

Returns:

None