tirank.LoadData.transfer_exp_profile

tirank.LoadData.transfer_exp_profile(scAnndata)

Converts the .X matrix of an AnnData object to a pandas DataFrame.

Handles both sparse and dense .X matrices. The resulting DataFrame is structured as genes (rows) x cells/spots (columns).

Parameters:

scAnndata (sc.AnnData) – The AnnData object.

Returns:

The expression matrix as a pandas DataFrame.

Return type:

pd.DataFrame